It's been a while since we last looked into this, but I believe we ran into a roadblock that prevented us from supporting the use of the VR controllers to control the yokes. We may be able to work around that roadblock now, but we would need to investigate it further to confirm that. We've nudged the priority of this up on our internal bugs list, and we'll investigate it ahead of the next updates to the products.
In the meantime, it is possible to use a joystick/yoke/Xbox controller to control the yoke whilst in VR.
In this instance, the JustFlight.com and marketplace versions of the product are essentially identical, with the only differences being in the file structure due to marketplace requirements (which doesn't affect VR support).
Mark - Just Flight