I don't see an issue with the placement of the LIM waypoint here, as @JabbyJabara says those are all 6000+ restrictions so you wouldn't expect to be at 6000ft until WW974. What was your cruise altitude for the flight?
As for whether the LIM point would reflect an earlier speed restriction, we had quite a bit of debate over this internally but found evidence amongst the documentation that it always will display the standard 250/10,000ft but the aircraft will stick to the procedure speed restriction.